I would be quite surprised if the Gentoo image differs noticeably from the "defaults." Portage will be stock, and I'd actually be surprised if the compiler settings are tweaked significantly.
For many many tasks, I/O performance is significantly more important than CPU performance. Digging through piles of data is one of those tasks.
The trick? No SAN. Local storage, most likely 15k SAS. Throw in a hardware RAID controller, with fat read caches and battery backup'd write cache, and many of the limitations of rotating magnetic storage start to become less significant...
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